Publications
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145 Publications
- Show 1 Publication
CGCI-HTMCP-LC, CGCI - HIV+ Tumor Molecular Characterization Project...
- Show 5 Publications
CGCI Non-Hodgkin Lymphoma (CGCI-NHL)
- Show 4 Publications
TARGET - TARGET Neuroblastoma (NBL)
- Show 7 Publications
TARGET - TARGET Acute Myeloid Leukemia (AML)
- Show 1 Publication
TARGET - TARGET Osteosarcoma (OS)
- Show 1 Publication
TARGET - TARGET Analysis Working Group (TAWG)
- Show 14 Publications
TARGET - TARGET Acute Lymphoblastic Leukemia (ALL)
- Show 7 Publications
TARGET - TARGET Kidney Projects Publications
- Show 22 Publications
TCGA - PanCanAtlas Publications
63. A Compendium of Next-Generation Patient-Derived Models for Diverse Cancers
Citation TBD
This publication is part of
GDC
64. Proteogenomic characterization of invasive breast tumors in young women Read the full article
NPJ Breast Cancer. Volume 11, Issue 1: p. 94, 18 Aug 2025
This publication is part of
APOLLO-BRCA-1
65. Integrative analysis of lung adenocarcinoma across diverse ethnicities and exposures Read the full article
Cancer Cell. Volume 43, Issue 9: p. 1731-1757.e17, 8 Sep 2025
This publication is part of
CPTAC
66. DNA methylation epitypes of Burkitt lymphoma with distinct molecular and clinical features Read the full article
Blood Cancer Discov. 8 May 2025
This publication is part of
CGCI-BLGSP
67. Classification of non-TCGA Cancer Samples to TCGA Molecular Subtypes Using Compact Feature Sets
Cancer Cell. Volume 43, Issue 2, p.195-212.e11, 10 February 2025
68. Genomic Determinants of Outcome in Acute Lymphoblastic Leukemia Read Full Article
Journal of Clinical Oncology. Volume 42, Issue 29, p.3491-3503, 9 August 2024
This publication is part of
MP2PRT-ALL
69. Three-dimensional genome landscape of primary human cancers Read the full article
Nature Genetics. 12 May 2025, 10.1038/s41588-025-02188-0
This publication is part of
HiChIP
70. Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers.
Science. Volume 385 Number 6713: eadk9217, September 6, 2024
This publication is part of
ATAC-Seq
71. Multi-scale signaling and tumor evolution in high-grade gliomas Read the full article
Cancer Cell. Volume 42, Issue 7: p. 1217-1238.e19, 8 Jul 2024
This publication is part of
CPTAC
72. Comprehensive proteogenomic characterization of rare kidney tumors Read the full article
Cell Reports Medicine. Volume 5, Issue 5, 21 May 2024
This publication is part of
CPTAC
73. Proteogenomic analysis of enriched HGSOC tumor epithelium identifies prognostic signatures and therapeutic vulnerabilities Read the full article
NPC Precis Oncol. Volume 8 Issue 1: 68. March 13, 2024
This publication is part of
APOLLO-OV
74. Proteogenomic insights suggest druggable pathways in endometrial carcinoma Read the full article
Cancer Cell. Volume 41, Issue 9: p. 1586-1605.e15, 11 Sep 2023
This publication is part of
CPTAC
75. Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness Read the full article
Cancer Cell. Volume 41, Issue 1: p. 139-163.e17, 9 Jan 2023
This publication is part of
CPTAC
76. Proteogenomic Analysis of Lung Adenocarcinoma Reveals Tumor Heterogeneity, Survival Determinants and Therapeutically-Relevant Pathways
Cell Reports Medicine. Volume 3 Issue 11: p.6100819, November 15, 2022
This publication is part of
APOLLO-LUAD
77. Genetic Changes Associated With Relapse in Favorable Histology Wilms Tumor - A Children’s Oncology Group AREN03B2 Study Read Full Article
Cell Reports Medicine. Volume 3, Issue 6, 100644, 21 June 2022
This publication is part of
MP2PRT-WT
78. Genetic Subgroups Inform On Pathobiology In Adult And Pediatric Burkitt Lymphoma
Blood. Epub, October 6, 2022
This publication is part of
CGCI-HTMCP-DLBCL, CGCI-BLGSP
79. Combinatorial and Machine Learning Approaches for Improved Somatic Variant Calling from Formalin-Fixed Paraffin-Embedded Genome Sequence Data Read the full article
April 27, 2022; 10.3389/fgene.2022.834764
This publication is part of
CGCI-HTMCP-CC, CGCI-BLGSP
80. Integrative Analysis of Drug Response and Clinical Outcome in Acute Myeloid Leukemia Read the full article
Cancer Cell. Volume 40, Issue 8: p.850-864, 8 August 2022
This publication is part of
BEATAML1.0-COHORT
81. Proteogenomic Characterization of Pancreatic Ductal Adenocarcinoma Read the full article
Cell. Volume 184, Issue 19: p. 5031-5052.e26, 16 Sep 2021
This publication is part of
CPTAC
82. A proteogenomic portrait of lung squamous cell carcinoma Read the full article
Cell. Volume 184, Issue 16: p. 4348-4371.e40, 5 Aug 2021
This publication is part of
CPTAC
83. Lack of transgenerational effects of ionizing radiation exposure in cleanup workers and evacuees of the Chernobyl accident
Science. Volume 372, Issue 6543: p.725-729, 14 May 2021
This publication is part of
TRIO-CRU
84. Radiation-related genomic profile of papillary thyroid cancer after the Chernobyl accident
Science. Volume 372, Issue 6543, 14 May 2021
This publication is part of
REBC-THYR
85. Proteogenomic and metabolomic characterization of human glioblastoma Read the full article
Cancer Cell. Volume 39, Issue 4: p. 509-528.e20, 12 Apr 2021
This publication is part of
CPTAC
86. Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma Read the full article
Cancer Cell. Volume 39, Issue 3: p. 361-379.e16, 8 Mar 2021
This publication is part of
CPTAC
87. The NCI Genomic Data Commons Read the full article
Nature Genetics. 2021 Feb 22 53, 257–262. doi: 0.1038/s41588-021-00791-5
This publication is part of
GDC
88. Uniform genomic data analysis in the NCI Genomic Data Commons Read the full article
Nature Communications. 2021 Feb 22 12, 1226. doi: 10.1038/s41467-021-21254-9
This publication is part of
GDC
89. Whole-genome Characterization of Lung Adenocarcinomas Lacking Alterations in the RTK/RAS/RAF Pathway Read the full article
Cell Reports. Volume 34; Issue 5, 2 February 2021
This publication is part of
TCGA-LUAD
90. Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy Read the full article
Cell. Volume 183, Issue 5: p. 1436-1456.e31, 25 Nov 2020
This publication is part of
CPTAC
91. Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes. Read the full article
3 August 2020; 10.1038/s41588-020-0673-7
This publication is part of
CGCI-HTMCP-CC
92. Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma Read the full article
Cell. Volume 182, Issue 1: p. 200-225.e35, 9 Jul 2020
This publication is part of
CPTAC
93. Comprehensive Analysis of Genetic Ancestry and Its Molecular Correlates in Cancer Read the full article
Cancer Cell. Volume 37 Issue 5: p.639-654.E6, May 11, 2020
This publication is part of
CCG-AIM
94. Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability Read the full article
Cell. Volume 1, Issue 1, 21 Apr 2020
This publication is part of
CPTAC
95. Proteogenomic Characterization of Endometrial Carcinoma Cell Read the full article
Cell. Volume 180, Issue 4: p. 729-748.e26, 20 Feb 2020
This publication is part of
CPTAC
96. The Angiosarcoma Project: enabling genomic and clinical discoveries in a rare cancer through patient-partnered research Read the full article
Nature Medicine. Volume 26 Issue 2: p181-187, 20 February 2020
This publication is part of
CMI-ASC
97. Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design Link to the main article
Cell Rep. Volume 29, Issue 6: p.:1675-1689, 10.1016/j.celrep.2019.09.071
This publication is part of
TARGET-MDLS
98. Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma Read the full article
Cell. Volume 179, Issue 4: p. 964-983.e31, 31 Oct 2019
This publication is part of
CPTAC
99. Before and After: A Comparison of Legacy and Harmonized TCGA Data at the Genomic Data Commons
Cell Systems. Volume 9 Issue 1: p.24-34, July 24, 2019
This publication is part of
GDC
100. Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities Read the full article
Cell. Volume 177, Issue 4: p. 1035-1049.e19, 2 May 2019
This publication is part of
CPTAC
101. Clinical resistance to crenolanib in acute myeloid leukemia due to diverse molecular mechanisms Read the full article
Nature Communications. Volume 10 Issue 1: p.244, 16 January 2019
This publication is part of
BEATAML1.0-CRENOLANIB
102. Genome-wide discovery of somatic coding and non-coding mutations in pediatric endemic and sporadic Burkitt lymphoma Read the full article
7 January 2019; 10.1182/blood-2018-09-871418
This publication is part of
CGCI-BLGSP
103. Integrative Molecular Characterization of Malignant Pleural Mesothelioma Read the full article
Cancer Discovery. Volume 8 Issue 12: p.1548-1565, December 2018
This publication is part of
TCGA-MESO
104. Functional genomic landscape of acute myeloid leukaemia Read the full article
Nature. Volume 562 Issue 7728: p.526-531, 17 October 2018
This publication is part of
BEATAML1.0-COHORT
105. The chromatin accessibility landscape of primary human cancers
Science. Volume 362 Issue 6413: p.eaav1898, 25 October 2018
This publication is part of
TCGA
106. Genetics and Pathogenesis of Diffuse Large B Cell Lymphoma
New England Journal of Medicine. Volume 378 p1396-1407, 12 April 2018
This publication is part of
TCGA-DLBC, NCICCR-DLBCL, CTSP-DLBCL1
107. The Integrated Genomic Landscape of Thymic Epithelial Tumors Read the full article
Cancer Cell. Volume 33 Issue 2: p244-258.e.10, February 12, 2018
This publication is part of
TCGA-THYM
108. Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas Read the full article
Cell. Volume 171 Issue 4: p950-965, 2 November 2017
This publication is part of
TCGA-SARC
109. Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer Read the full article
Cell. Volume 171 Issue 3: p540–556.e25, 19 October 2017
This publication is part of
TCGA-BLCA
110. Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma Read the full article
Cancer Cell. Volume 32 Issue 2: p185-203.
This publication is part of
TCGA-PAAD
111. Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma Read the full article
Cancer Cell. Volume 32 Issue 2: p204-220.
This publication is part of
TCGA-UVM
112. Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma Read the full article
Cell. Volume 169 Issue 7: p1327-1341.
This publication is part of
TCGA-LIHC
113. The NCI Genomic Data Commons as an Engine for Precision Medicine Read the full article
Blood. 2017 Jul 27 130(4):453-459. doi: 10.1182/blood-2017-03-735654. Epub 2017 Jun 9.
This publication is part of
GDC
114. Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles Read the full article
Cell Reports. Volume 18 Issue 11: p2780-2794.
This publication is part of
TCGA-CHOL
115. Integrated Molecular Characterization of Uterine Carcinosarcoma Read the full article
Cancer Cell. Volume 31 Issue 3: p411-423, 13 March 2017
This publication is part of
TCGA-UCS
116. Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma Read the full article
Cancer Cell. Volume 31 Issue 2: p181-193, 13 February 2017
This publication is part of
TCGA-PCPG
117. Integrated Genomic and Molecular Characterization of Cervical Cancer Read the full article
Nature. Volume 543: p378-384.
This publication is part of
TCGA-CESC
118. Integrated Genomic Characterization of Oesophageal Carcinoma Read the full article
Nature. Volume 541: 169-175.
This publication is part of
TCGA-ESCA
119. Toward a Shared Vision for Cancer Genomic Data Read the full article
New England Journal of Medicine. 375:12 (7418): 1109-1112.
This publication is part of
GDC
120. Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma Read the full article
Cancer Cell. Volume 29 Issue 5: p723–736.
This publication is part of
TCGA-ACC
121. Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma Read the full article
Cell. 164 Issue 3: p550-563.
122. The Molecular Taxonomy of Primary Prostate Cancer Read the full article
Cell. 163 Issue 4: p1011-1025.
This publication is part of
TCGA-PRAD
123. Comprehensive Molecular Characterization of Papillary Renal Cell Carcinoma Read the full article
NEJM. 374: 135-145.
This publication is part of
TCGA-KIRP
124. Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer Read the full article
Cell. Volume 163 Issue 2: p506–519.
This publication is part of
TCGA-BRCA
125. Comprehensive and Integrative Genomic Characterization of Diffuse Lower Grade Gliomas Read the full article
NEJM. 372: 2481-2498.
This publication is part of
TCGA-LGG
126. Genomic Classification of Cutaneous Melanoma Read the full article
Cell. 161 Issue 7: 1681-1696.
This publication is part of
TCGA-SKCM
127. Comprehensive Genomic Characterization of Head and Neck Squamous Cell Carcinomas Read the full article
Nature. 517 (7536): 576-582.
This publication is part of
TCGA-HNSC
128. Integrated Genomic Characterization of Papillary Thyroid Carcinoma Read the full article
Cell. 159 Issue 3: 676-690.
This publication is part of
TCGA-THCA
129. Comprehensive Molecular Characterization of Gastric Adenocarcinoma Read the full article
Nature. 513 (7517): 202-209.
This publication is part of
TCGA-STAD
130. The Somatic Genomic Landscape Of Chromophobe Renal Cell Carcinoma Read the full article
Cancer Cell. 26 Issue 3: 319-330.
This publication is part of
TCGA-KICH
131. Comprehensive molecular profiling of lung adenocarcinoma Read the full article
Nature. 511 (7511): 543-550.
This publication is part of
TCGA-LUAD
132. Comprehensive Molecular Characterization of Urothelial Bladder Carcinoma Read the full article
Nature. 507 (7492): 315-322.
This publication is part of
TCGA-BLCA
133. The Somatic Genomic Landscape of Glioblastoma Read the full article
Cell. 155 (2): 462-477.
This publication is part of
TCGA-GBM
134. Comprehensive molecular characterization of clear cell renal cell carcinoma Read the full article
Nature. 499 (7456): 43-49.
This publication is part of
TCGA-KIRC
135. Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia Read the full article
NEJM. 368: 2059-2074.
This publication is part of
TCGA-LAML
136. Integrated Genomic Characterization of Endometrial Carcinoma Read the full article
Nature. 497 (7447): 67-73.
This publication is part of
TCGA-UCEC
137. Prognostically relevant gene signatures of high-grade serous ovarian carcinoma
Journal of Clinical Investigation. Volume 123 Issue 1 , 2 January 2013
This publication is part of
TCGA-OVCA
138. Comprehensive molecular portraits of human breast tumors Read the full article
Nature. 490 (7418): 61-70.
This publication is part of
TCGA-BRCA
139. Comprehensive genomic characterization of squamous cell lung cancers Read the full article
Nature. 489 (7417): 519-525.
This publication is part of
TCGA-LUSC
140. Comprehensive Molecular Characterization of Human Colon and Rectal Cancer Read the full article
Nature. 487 (7407): 330-337.
141. Integrated Genomic Analyses of Ovarian Carcinoma Read the full article
Nature. 474 (7353): 609-615.
This publication is part of
TCGA-OVCA
142. Ancestry and pharmacogenomics of relapse in acute lymphoblastic leukemia Read the full article
Nature Genetics. 2011 Mar;43(3):237-41
This publication is part of
TARGET-ALL
143. Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma Read the full article
Cancer Cell. 17 (5): 510-522.
This publication is part of
TCGA-GBM
144. An integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR and NF1 Read the full article
Cancer Cell. 17 (1): 98-110.
This publication is part of
TCGA-GBM
145. Comprehensive genomic characterization defines human glioblastoma genes and core pathways Read the full article
Nature. 455 (7216): 1061-1068.
This publication is part of
TCGA-GBM