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Publications

The GDC provides access to information and supplementary files from publications associated with NCI supported programs. See Requesting a Publication Page for additional information.

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128 Publications
63. DNA methylation epitypes of Burkitt lymphoma with distinct molecular and clinical features Read the full article

Blood Cancer Discov. 8 May 2025

This publication is part of CGCI-BLGSP
64. Classification of non-TCGA Cancer Samples to TCGA Molecular Subtypes Using Compact Feature Sets

Cancer Cell. Volume 43, Issue 2, p.195-212.e11, 10 February 2025

This publication is part of GDC
65. Genomic Determinants of Outcome in Acute Lymphoblastic Leukemia Read Full Article

Journal of Clinical Oncology. Volume 42, Issue 29, p.3491-3503, 9 August 2024

This publication is part of MP2PRT-ALL
66. Three-dimensional genome landscape of primary human cancers Read the full article

Nature Genetics. 12 May 2025, 10.1038/s41588-025-02188-0

This publication is part of TCGA
67. Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers.

Science. Volume 385 Number 6713:  eadk9217, September 6, 2024

This publication is part of TCGA
68. Proteogenomic analysis of enriched HGSOC tumor epithelium identifies prognostic signatures and therapeutic vulnerabilities Read the full article

NPC Precis Oncol. Volume 8 Issue 1: 68. March 13, 2024

This publication is part of APOLLO
69. Proteogenomic Analysis of Lung Adenocarcinoma Reveals Tumor Heterogeneity, Survival Determinants and Therapeutically-Relevant Pathways

Cell Reports Medicine. Volume 3 Issue 11: p.6100819, November 15, 2022

This publication is part of APOLLO
70. Genetic Changes Associated With Relapse in Favorable Histology Wilms Tumor - A Children’s Oncology Group AREN03B2 Study Read Full Article

Cell Reports Medicine. Volume 3, Issue 6, 100644, 21 June 2022

This publication is part of MP2PRT-WT
71. Genetic Subgroups Inform On Pathobiology In Adult And Pediatric Burkitt Lymphoma

Blood. Epub, October 6, 2022

This publication is part of CGCI-HTMCP-DLBCL, CGCI-BLGSP
72. Combinatorial and Machine Learning Approaches for Improved Somatic Variant Calling from Formalin-Fixed Paraffin-Embedded Genome Sequence Data Read the full article

April 27, 2022; 10.3389/fgene.2022.834764

This publication is part of CGCI-HTMCP-CC, CGCI-BLGSP
73. Integrative Analysis of Drug Response and Clinical Outcome in Acute Myeloid Leukemia Read the full article

Cancer Cell. Volume 40, Issue 8: p.850-864, 8 August 2022

This publication is part of BEATAML1.0-COHORT
74. Lack of transgenerational effects of ionizing radiation exposure in cleanup workers and evacuees of the Chernobyl accident

Science. Volume 372, Issue 6543: p.725-729, 14 May 2021

This publication is part of TRIO
75. Radiation-related genomic profile of papillary thyroid cancer after the Chernobyl accident

Science. Volume 372, Issue 6543, 14 May 2021

This publication is part of REBC
76. The NCI Genomic Data Commons Read the full article

Nature Genetics. 2021 Feb 22 53, 257–262. doi: 0.1038/s41588-021-00791-5

This publication is part of GDC
77. Uniform genomic data analysis in the NCI Genomic Data Commons Read the full article

Nature Communications. 2021 Feb 22 12, 1226. doi: 10.1038/s41467-021-21254-9

This publication is part of GDC
78. Whole-genome Characterization of Lung Adenocarcinomas Lacking Alterations in the RTK/RAS/RAF Pathway Read the full article

Cell Reports. Volume 34; Issue 5, 2 February 2021

This publication is part of TCGA-LUAD
79. Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes. Read the full article

3 August 2020; 10.1038/s41588-020-0673-7

This publication is part of CGCI-HTMCP-CC
80. Comprehensive Analysis of Genetic Ancestry and Its Molecular Correlates in Cancer Read the full article

Cancer Cell. Volume 37 Issue 5: p.639-654.E6, May 11, 2020

This publication is part of AIM
81. The Angiosarcoma Project: enabling genomic and clinical discoveries in a rare cancer through patient-partnered research Read the full article

Nature Medicine. Volume 26 Issue 2: p181-187, 20 February 2020

This publication is part of CMI-ASC
82. Genomic Profiling of Childhood Tumor Patient-Derived Xenograft Models to Enable Rational Clinical Trial Design Link to the main article

Cell Rep. Volume 29, Issue 6: p.:1675-1689, 10.1016/j.celrep.2019.09.071

This publication is part of TARGET-MDLS
83. Before and After: A Comparison of Legacy and Harmonized TCGA Data at the Genomic Data Commons

Cell Systems. Volume 9 Issue 1: p.24-34, July 24, 2019

This publication is part of GDC
84. Clinical resistance to crenolanib in acute myeloid leukemia due to diverse molecular mechanisms Read the full article

Nature Communications. Volume 10 Issue 1: p.244, 16 January 2019

This publication is part of BEATAML1.0-CRENOLANIB
85. Genome-wide discovery of somatic coding and non-coding mutations in pediatric endemic and sporadic Burkitt lymphoma Read the full article

7 January 2019; 10.1182/blood-2018-09-871418

This publication is part of CGCI-BLGSP
86. Integrative Molecular Characterization of Malignant Pleural Mesothelioma Read the full article

Cancer Discovery. Volume 8 Issue 12: p.1548-1565, December 2018

This publication is part of TCGA-MESO
87. Functional genomic landscape of acute myeloid leukaemia Read the full article

Nature. Volume 562 Issue 7728: p.526-531, 17 October 2018

This publication is part of BEATAML1.0-COHORT
88. The chromatin accessibility landscape of primary human cancers

Science. Volume 362 Issue 6413: p.eaav1898, 25 October 2018

This publication is part of TCGA
89. Genetics and Pathogenesis of Diffuse Large B Cell Lymphoma

New England Journal of Medicine. Volume 378 p1396-1407, 12 April 2018

This publication is part of NCICCR-DLBCL, CTSP-DLBCL1
90. The Integrated Genomic Landscape of Thymic Epithelial Tumors Read the full article

Cancer Cell. Volume 33 Issue 2: p244-258.e.10, February 12, 2018

This publication is part of TCGA-THYM
91. Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas Read the full article

Cell. Volume 171 Issue 4: p950-965, 2 November 2017

This publication is part of TCGA-SARC
92. Comprehensive Molecular Characterization of Muscle-Invasive Bladder Cancer Read the full article

Cell. Volume 171 Issue 3: p540–556.e25, 19 October 2017

This publication is part of TCGA-BLCA
93. Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma Read the full article

Cancer Cell. Volume 32 Issue 2: p185-203.

This publication is part of TCGA-PAAD
94. Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma Read the full article

Cancer Cell. Volume 32 Issue 2: p204-220.

This publication is part of TCGA-UVM
95. Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma Read the full article

Cell. Volume 169 Issue 7: p1327-1341.

This publication is part of TCGA-LIHC
96. The NCI Genomic Data Commons as an Engine for Precision Medicine Read the full article

Blood. 2017 Jul 27 130(4):453-459. doi: 10.1182/blood-2017-03-735654. Epub 2017 Jun 9.

This publication is part of GDC
97. Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles Read the full article

Cell Reports. Volume 18 Issue 11: p2780-2794.

This publication is part of TCGA-CHOL
98. Integrated Molecular Characterization of Uterine Carcinosarcoma Read the full article

Cancer Cell. Volume 31 Issue 3: p411-423, 13 March 2017

This publication is part of TCGA-UCS
99. Comprehensive Molecular Characterization of Pheochromocytoma and Paraganglioma Read the full article

Cancer Cell. Volume 31 Issue 2: p181-193, 13 February 2017

This publication is part of TCGA-PCPG
100. Integrated Genomic and Molecular Characterization of Cervical Cancer Read the full article

Nature. Volume 543: p378-384.

This publication is part of TCGA-CESC
101. Integrated Genomic Characterization of Oesophageal Carcinoma Read the full article

Nature. Volume 541: 169-175.

This publication is part of TCGA-ESCA
102. Toward a Shared Vision for Cancer Genomic Data Read the full article

New England Journal of Medicine. 375:12 (7418): 1109-1112.

This publication is part of GDC
103. Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma Read the full article

Cancer Cell. Volume 29 Issue 5: p723–736.

This publication is part of TCGA-ACC
104. Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma Read the full article

Cell. 164 Issue 3: p550-563.

This publication is part of TCGA-GBM, TCGA-LGG
105. The Molecular Taxonomy of Primary Prostate Cancer Read the full article

Cell. 163 Issue 4: p1011-1025.

This publication is part of TCGA-PRAD
106. Comprehensive Molecular Characterization of Papillary Renal Cell Carcinoma Read the full article

NEJM. 374: 135-145.

This publication is part of TCGA-KIRP
107. Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer Read the full article

Cell. Volume 163 Issue 2: p506–519.

This publication is part of TCGA-BRCA
108. Comprehensive and Integrative Genomic Characterization of Diffuse Lower Grade Gliomas Read the full article

NEJM. 372: 2481-2498.

This publication is part of TCGA-LGG
109. Genomic Classification of Cutaneous Melanoma Read the full article

Cell. 161 Issue 7: 1681-1696.

This publication is part of TCGA-SKCM
110. Comprehensive Genomic Characterization of Head and Neck Squamous Cell Carcinomas Read the full article

Nature. 517 (7536): 576-582.

This publication is part of TCGA-HNSC
111. Integrated Genomic Characterization of Papillary Thyroid Carcinoma Read the full article

Cell. 159 Issue 3: 676-690.

This publication is part of TCGA-THCA
112. Comprehensive Molecular Characterization of Gastric Adenocarcinoma Read the full article

Nature. 513 (7517): 202-209.

This publication is part of TCGA-STAD
113. The Somatic Genomic Landscape Of Chromophobe Renal Cell Carcinoma Read the full article

Cancer Cell. 26 Issue 3: 319-330.

This publication is part of TCGA-KICH
114. Comprehensive molecular profiling of lung adenocarcinoma Read the full article

Nature. 511 (7511): 543-550.

This publication is part of TCGA-LUAD
115. Comprehensive Molecular Characterization of Urothelial Bladder Carcinoma Read the full article

Nature. 507 (7492): 315-322.

This publication is part of TCGA-BLCA
116. The Somatic Genomic Landscape of Glioblastoma Read the full article

Cell. 155 (2): 462-477.

This publication is part of TCGA-GBM
117. Comprehensive molecular characterization of clear cell renal cell carcinoma Read the full article

Nature. 499 (7456): 43-49.

This publication is part of TCGA-KIRC
118. Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia Read the full article

NEJM. 368: 2059-2074.

This publication is part of TCGA-LAML
119. Integrated Genomic Characterization of Endometrial Carcinoma Read the full article

Nature. 497 (7447): 67-73.

This publication is part of TCGA-UCEC
120. Prognostically relevant gene signatures of high-grade serous ovarian carcinoma

Journal of Clinical Investigation. Volume 123 Issue 1 , 2 January 2013

This publication is part of TCGA-OVCA
121. Comprehensive molecular portraits of human breast tumors Read the full article

Nature. 490 (7418): 61-70.

This publication is part of TCGA-BRCA
122. Comprehensive genomic characterization of squamous cell lung cancers Read the full article

Nature. 489 (7417): 519-525.

This publication is part of TCGA-LUSC
123. Comprehensive Molecular Characterization of Human Colon and Rectal Cancer Read the full article

Nature. 487 (7407): 330-337.

This publication is part of TCGA-COAD, TCGA-READ
124. Integrated Genomic Analyses of Ovarian Carcinoma Read the full article

Nature. 474 (7353): 609-615.

This publication is part of TCGA-OVCA
125. Ancestry and pharmacogenomics of relapse in acute lymphoblastic leukemia Read the full article

Nature Genetics. 2011 Mar;43(3):237-41

This publication is part of TARGET-ALL
126. Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma Read the full article

Cancer Cell. 17 (5): 510-522.

This publication is part of TCGA-GBM
127. An integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR and NF1 Read the full article

Cancer Cell. 17 (1): 98-110.

This publication is part of TCGA-GBM
128. Comprehensive genomic characterization defines human glioblastoma genes and core pathways Read the full article

Nature. 455 (7216): 1061-1068.

This publication is part of TCGA-GBM

Requesting a Publication Page

The GDC provides publication pages with access to information and supplementary files from publications associated with NCI supported programs. Publication pages are provided for:

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  • Publications that involve primary analysis associated with the initial data submission

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