CGCI HIV+ Tumor Molecular Characterization Project: Lung Cancer (HTMCP-LC)

Supplemental Data

• GDC Manifests
  • Controlled-Access Data Download Manifest (2 Files)
  • Open-Access Data Download Manifest (4 Files)

• miRNA
  • CGCI-HTMCP-LC miRNA-Seq Level 3 Data

• mRNA
  • CGCI-HTMCP-LC mRNA-Seq Level 3 Data
  • CGCI-HTMCP-LC mRNA-Seq Level 3 Data (Controlled)

• Whole Genome Sequencing
  • CGCI-HTMCP-LC WGS Level 3 Data
  • CGCI-HTMCP-LC WGS Level 3 Data (Controlled)

• Miscellaneous Files
  • CGCI-HTMCP-LC Sample Matrix Level 3 Data

Additional Resources

• Office of Cancer Genomics (link is external)

Instructions for Data Download

Open Access Data

1. Download the appropriate manifest file from the publication page
2. Use the manifest file to download data using the GDC Data Transfer Tool (DTT) or the GDC API
   • GDC DTT ( Download, User's Guide)
   • GDC API ( User’s Guide)

Controlled Access Data

1. Download the appropriate manifest file from the publication page
2. Download a token from the GDC Data Portal
   • GDC Data Portal ( Launch, User’s Guide)
3. Use the manifest file and token to download data using the GDC DTT or the GDC API
   • GDC DTT ( Download, User’s Guide)
   • GDC API ( User’s Guide)

For assistance, please contact the GDC Help Desk: support@nci-gdc.datacommons.io.