The GDC provides user-friendly and interactive Data Analysis, Visualization, and Exploration (DAVE) Tools supporting gene and variant level analysis that allows researchers to:
The GDC provides interactive tools supporting data analysis, exploration, and visualization.
The GDC provides policies for publishing the results of analyzed data.
GDC variant calling pipelines generate high level data for analysis. Variant calling pipelines are implemented using data processing software and algorithms selected in consultation with the expert genomics community.
Cancer Research Highlights and Publications:
The IMPACT is categorized by the Sequencing Ontology type of the variants that is also compatible to snpEff. The VEP IMPACT rating is a separate rating given for compatibility with other variant annotation tools (e.g. snpEff). Basically, each category is associated with a set of SO terms:
Details about predicted data in variations are available at ENSEMBL
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