Data from AACR Project GENIE Released
The GDC has released data for over 44,000 cases from the American Association for Cancer Research’s Project Genomics Evidence Neoplasia Information Exchange (AACR Project GENIE, phs001337), includi
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Data From the MMRF's Longitudinal Study and Other Projects Released
Data from the Multiple Myeloma Research Foundation (MMRF) is now available at the GDC.
CPTAC Genomic Data Now Available in the NCI Genomic Data Commons (GDC)
CPTAC has provided the Genomic Data Commons (GDC) with genomic data from cancer patients with diverse disease types including Uterine Corpus Endometrial Carcinoma (UCEC), Clear Cell Renal Cell Carc
Diffuse Large B-Cell Lymphoma Data Available in GDC Data Portal
Data from molecular characterization of 574 Diffuse Large B-Cell Lymphoma (DLBCL) biopsy samples is now available in the GDC Data Portal.
The NCI GDC Releases New Slide Image Viewer
The NCI's Genomic Data Commons (GDC) released a new slide image viewing feature in the GDC Data Portal allowing researchers to view, zoom, and pan slide
GDC Webinar: Querying and Downloading Data using the GDC Data Portal and the GDC Data Transfer Tool
The Querying and Downloading Data using the GDC Data Portal and the GDC Data Transfer Tool webinar will help introduce users to the GDC tools for downloading and retrieving data from cancer genomic
How can I download BAM index files (BAI files) using the API?
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BAI files are included with the download when using the GDC Data Transfer Tool to download BAM files.
When using the API to download BAM files, BAI files will only be included if the related_files=true parameter is specified together with the BAM UUID, for example:
https://api.gdc.cancer.gov/data/53f4ad60-0777-409c-a34d-ca4442dc9c44?related_files=true
GDC Webinar: Navigating the GDC - A Case Study
The Navigating the GDC - A Case Study webinar is the first webinar in a series of NCI GDC Webinar.
What is the difference between files that have the same filename?
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The file detail page and the metadata files accessible from that page (if available) can be used to determine the difference between files that share the same filename. For example, the files may be associated with different aliquots, or different patients.
How can I access GDC sequencing data in FASTQ format?
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Raw sequencing files submitted to the GDC are processed using GDC Genomic Data Alignment pipelines. The processed data are made available in the GDC Data Portal as BAM files containing aligned reads and unmapped reads (if available). No reads are hard-clipped, but reads that were flagged as "failed" during an Illumina sequencing run are discarded.