9000+ New TCGA WGS alignments Now Available!
The GDC’s Data Release 38 includes 9000+ high coverage TCGA WGS alignments, data for new CGCI, MATCH, and MP2PRT projects, and a variety of data from other NCI programs:
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New GDC Data Dictionary Clinical Properties for TARGET, HCMI, and TCGA
In GDC Data Dictionary Release 2.6.6, the GDC added support for:
GDC Legacy Archive Retires
The Genomic Data Commons strives to provide standardized and relevant genomic data to the cancer research community.
New Projects at the GDC: Lung Cancer and MATCH Treatment Arms
The GDC’s Data Release 37 includes four new projects: APOLLO-LUAD - Proteogenomic Characterization of Lung Adenocarcinoma, CGCI-HTMCP-LC - HIV+ Tumor Molecular Characterization of Lung
New TCGA and TARGET Properties and Sample Type Restructuring
In GDC Data Dictionary Release 2.6.0, the GDC added support for:
New Data from NCI’s MATCH and EAGLE Studies Available
GDC Data Release 36 includes WXS and RNA-Seq data for cases from NCI’s MATCH precision medicine clinical trial (MATCH-Z1D; phs001859) and WGS, WXS, and RNA-Seq data for lung adenocarcinoma cases fr
Why do some projects with WGS structural variant data have BEDPE files and some projects do not?
Submitted by Anonymous
on
Generally any WGS data should have associated structural variant files (BEDPE) except in the cases in which either there are no tumor/normal matches or when variant calling has not been implemented yet.