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In the GDC Data Portal, where is the histogram of top frequently mutated genes for a cohort?
Submitted by gaheens
on
To view the top frequently mutated genes for a cohort, first build a cohort using the Cohort Builder and then select the Mutation Frequency tool in the Analysis Center
New Gene-Level Tool Enhancements and Gene Expression API Now in the GDC 2.2 McClintock Release!
In the GDC 2.2 McClintock Release, the following features have been released:
GDC Data Dictionary 3.1 Expands Diagnosis Information, TCGA Properties, and Bioinformatics Workflows
GDC Data Dictionary 3.1 expands diagnosis information, TCGA properties, and bioinformatics workflows:
New Cohort Level MAF Tool and Enhancements in GDC 2.0
Introducing the latest advancements in GDC 2.0 with Release 2.1! Here's what's new:
Introducing GDC 2.0: A New Cohort-Centric Design
The GDC has released GDC 2.0 which expands on the GDC Data Portal initially launched in 2016 by providing a cohort-centric design and new analysis tools. GDC 2.0 features include:
Why do some projects with WGS structural variant data have BEDPE files and some projects do not?
Submitted by Anonymous
on
Generally any WGS data should have associated structural variant files (BEDPE) except in the cases in which either there are no tumor/normal matches or when variant calling has not been implemented yet.