STAR gene expression quantification excludes reads that are mapped to multiple different genes. This can cause some genes to appear with zero expression in the final counts, even if mapped reads are present in the raw data.
The GDC is excited to announce the release of 8000+ new whole genome sequencing (WGS) variant calls as part of Data Release 42. Highlights of this release include:
The Sequence Reads and BAM Slicing tools, available in GDC 2.0, are powerful web-based resources for analyzing sequence reads. The Sequence Reads Tool enables users to visualize read alignments from BAM files, and classify reads supporting either the reference or alternative alleles based on variant information (e.g., chromosome, position, reference, and alternative alleles). The BAM Slicing Tool allows users to download specific sections of a BAM file, targeting particular genomic or unmapped regions, thus avoiding the need to download large, multi-gigabyte files. This webinar provides a comprehensive overview of both tools.
This webinar is designed for researchers interested in visualizing DNA or RNA sequencing reads or downloading Binary Alignment Map (BAM) slices for a specific gene, position, SNP, or variant. It is ideal for anyone looking to analyze sequence reads for cancer mutations, regardless of their prior experience in genomics.
The Sequence Reads and BAM Slicing tools, available in GDC 2.0, are powerful web-based resources for analyzing sequence reads. The Sequence Reads Tool enables users to visualize read alignments from BAM files, and classify reads supporting either the reference or alternative alleles based on variant information (e.g., chromosome, position, reference, and alternative alleles). The BAM Slicing Tool allows users to download specific sections of a BAM file, targeting particular genomic or unmapped regions, thus avoiding the need to download large, multi-gigabyte files. This webinar will provide a comprehensive overview of both tools.
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Sequence Reads Analysis with GDC 2.0 Webinar Presentation.
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The latest GDC 2.3 Pauling Release introduces several new features designed to enhance user experience and improve data analysis.
