Main Content

Data Types

Center Type Display Name FTP Display Available
CGCC Expression-Genes transcriptome Yes
CGCC Expression-Exon exon Yes
CGCC Expression-miRNA mirna Yes
CGCC CNV (CN Array) cna Yes
CGCC DNA Methylation methylation Yes
CGCC CNV (SNP Array) snp Yes
CGCC SNP Frequencies snp No
CGCC SNP Copy Number Results cna No
GSC Trace-Sample Relationship tracerel Yes
GSC Somatic Mutations mutations Yes
BCR Complete Clinical Set clin Yes
BCR Minimal Clinical Set clin Yes
GSC Sequencing Trace seq No
BCR Tissue Slide Images slide_images Yes
GSC Short-Read Relationship sr Yes
GSC BAM-file Relationship bam Yes
CGCC Quantification-miRNA mirnaseq Yes
CGCC Quantification-miRNA Isoform mirnaseq Yes
CGCC Annotations annotations Yes
CGCC miRNA Sequence-Variants mirnaseq Yes
CGCC Quantification-Junction rnaseq Yes
CGCC Quantification-Gene rnaseq Yes
CGCC Quantification-Exon rnaseq Yes
BCR Reports reports Yes
CGCC RNASeq rnaseq Yes
CGCC miRNASeq mirnaseq Yes
CGCC Expression-Protein protein_exp Yes
CGCC Raw Sequence raw_sequence Yes
CGCC Fragment Analysis Results fragment_analysis Yes
CGCC GCC Reports gcc_reports Yes
CGCC RNA Sequence-Variants rnaseq Yes
CGCC RNA Structural-Variants rnaseq Yes
CGCC RNASeqV2 rnaseqV2 Yes
CGCC CNV (Low Pass DNASeq) cna Yes
GSC Protected Mutations mutations_protected Yes
CGCC Methylation - Bisulfite Sequencing bisulfiteseq Yes
CGCC TotalRNASeqV2 totalrnaseqV2 Yes
GDAC analyses analyses Yes
GDAC stddata stddata Yes
GDAC Firehose Reports reports Yes