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New TARGET AML RNA-Seq and CPTAC Single Nuclei RNA-Seq Data, Update to Variant Caller Pipeline

New data sets are now available including RNA-Seq data from the TARGET acute myeloid leukemia project and single nuclei RNA-Seq data from the CPTAC program. These changes are summarized below:

  • New RNA-Seq data from TARGET-AML for over 2,000 cases
  • New snRNA-Seq data from CPTAC-3 for kidney cancer

The SomaticSniper whole exome variant calling pipeline has been deprecated. Because of this, SomaticSniper variants will now only be found in older versions of VCF or MAF files.

For a detailed list of changes, see the Data Release Notes.