aliquot quantity |
Aliquot |
--- |
Optional |
aliquot volume |
Aliquot |
--- |
Optional |
amount |
Aliquot |
--- |
Optional |
analyte type |
Aliquot |
2513915 |
Optional |
analyte type id |
Aliquot |
5432508 |
Optional |
concentration |
Aliquot |
5432594 |
Optional |
no matched normal low pass wgs |
Aliquot |
--- |
Optional |
no matched normal targeted sequencing |
Aliquot |
--- |
Optional |
no matched normal wgs |
Aliquot |
--- |
Optional |
no matched normal wxs |
Aliquot |
--- |
Optional |
selected normal low pass wgs |
Aliquot |
--- |
Optional |
selected normal targeted sequencing |
Aliquot |
--- |
Optional |
selected normal wgs |
Aliquot |
--- |
Optional |
selected normal wxs |
Aliquot |
--- |
Optional |
source center |
Aliquot |
--- |
Optional |
a260 a280 ratio |
Analyte |
5432595 |
Optional |
amount |
Analyte |
--- |
Optional |
analyte quantity |
Analyte |
--- |
Optional |
analyte type |
Analyte |
2513915 |
Required |
analyte type id |
Analyte |
5432508 |
Optional |
analyte volume |
Analyte |
--- |
Optional |
concentration |
Analyte |
5432594 |
Optional |
experimental protocol type |
Analyte |
--- |
Optional |
normal tumor genotype snp match |
Analyte |
4588156 |
Optional |
ribosomal rna 28s 16s ratio |
Analyte |
--- |
Optional |
rna integrity number |
Analyte |
C63637 |
Optional |
spectrophotometer method |
Analyte |
3008378 |
Optional |
well number |
Analyte |
5432613 |
Optional |
consent type |
Case |
--- |
Optional |
days to consent |
Case |
--- |
Optional |
days to lost to followup |
Case |
6154721 |
Optional |
disease type |
Case |
6161017 |
Required |
index date |
Case |
6154722 |
Optional |
lost to followup |
Case |
6161018 |
Optional |
primary site |
Case |
6161019 |
Required |
creation datetime |
Portion |
5432592 |
Optional |
is ffpe |
Portion |
4170557 |
Optional |
portion number |
Portion |
5432711 |
Optional |
weight |
Portion |
5432593 |
Optional |
adapter name |
Read group |
--- |
Optional |
adapter sequence |
Read group |
--- |
Optional |
base caller name |
Read group |
--- |
Optional |
base caller version |
Read group |
--- |
Optional |
chipseq antibody |
Read group |
--- |
Optional |
chipseq target |
Read group |
--- |
Optional |
days to sequencing |
Read group |
--- |
Optional |
experiment name |
Read group |
--- |
Required |
flow cell barcode |
Read group |
--- |
Optional |
fragment maximum length |
Read group |
--- |
Optional |
fragment mean length |
Read group |
--- |
Optional |
fragment minimum length |
Read group |
--- |
Optional |
fragment standard deviation length |
Read group |
--- |
Optional |
fragmentation enzyme |
Read group |
--- |
Optional |
includes spike ins |
Read group |
--- |
Optional |
instrument model |
Read group |
5432604 |
Optional |
is paired end |
Read group |
--- |
Required |
lane number |
Read group |
--- |
Optional |
library name |
Read group |
--- |
Required |
library preparation kit catalog number |
Read group |
--- |
Optional |
library preparation kit name |
Read group |
--- |
Optional |
library preparation kit vendor |
Read group |
--- |
Optional |
library preparation kit version |
Read group |
--- |
Optional |
library selection |
Read group |
--- |
Required |
library strand |
Read group |
--- |
Optional |
library strategy |
Read group |
--- |
Required |
multiplex barcode |
Read group |
--- |
Optional |
number expect cells |
Read group |
--- |
Optional |
platform |
Read group |
--- |
Required |
read group name |
Read group |
--- |
Required |
read length |
Read group |
--- |
Required |
rin |
Read group |
5278775 |
Optional |
sequencing center |
Read group |
--- |
Required |
sequencing date |
Read group |
--- |
Optional |
single cell library |
Read group |
--- |
Optional |
size selection range |
Read group |
--- |
Optional |
spike ins concentration |
Read group |
--- |
Optional |
spike ins fasta |
Read group |
--- |
Optional |
target capture kit |
Read group |
--- |
Required |
target capture kit catalog number |
Read group |
--- |
Optional |
target capture kit name |
Read group |
--- |
Optional |
target capture kit target region |
Read group |
--- |
Optional |
target capture kit vendor |
Read group |
--- |
Optional |
target capture kit version |
Read group |
--- |
Optional |
to trim adapter sequence |
Read group |
--- |
Optional |
biospecimen anatomic site |
Sample |
4742851 |
Optional |
biospecimen laterality |
Sample |
2007875 |
Optional |
catalog reference |
Sample |
--- |
Optional |
composition |
Sample |
5432591 |
Optional |
current weight |
Sample |
5432606 |
Optional |
days to collection |
Sample |
3008340 |
Optional |
days to sample procurement |
Sample |
--- |
Optional |
diagnosis pathologically confirmed |
Sample |
--- |
Optional |
distance normal to tumor |
Sample |
3088708 |
Optional |
distributor reference |
Sample |
--- |
Optional |
freezing method |
Sample |
5432607 |
Optional |
growth rate |
Sample |
--- |
Optional |
initial weight |
Sample |
5432605 |
Optional |
intermediate dimension |
Sample |
--- |
Optional |
is ffpe |
Sample |
4170557 |
Optional |
longest dimension |
Sample |
5432602 |
Optional |
method of sample procurement |
Sample |
--- |
Optional |
oct embedded |
Sample |
5432538 |
Optional |
passage count |
Sample |
--- |
Optional |
pathology report uuid |
Sample |
--- |
Optional |
preservation method |
Sample |
5432521 |
Required |
sample ordinal |
Sample |
--- |
Optional |
sample type |
Sample |
3111302 |
Optional |
sample type id |
Sample |
--- |
Optional |
shortest dimension |
Sample |
5432603 |
Optional |
specimen type |
Sample |
C70713 |
Required |
time between clamping and freezing |
Sample |
5432611 |
Optional |
time between excision and freezing |
Sample |
5432612 |
Optional |
tissue collection type |
Sample |
--- |
Optional |
tissue type |
Sample |
5432687 |
Required |
tumor code |
Sample |
--- |
Optional |
tumor code id |
Sample |
--- |
Optional |
tumor descriptor |
Sample |
3288124 |
Required |
bone marrow malignant cells |
Slide |
--- |
Optional |
number proliferating cells |
Slide |
5432636 |
Optional |
percent eosinophil infiltration |
Slide |
2897700 |
Optional |
percent follicular component |
Slide |
--- |
Optional |
percent granulocyte infiltration |
Slide |
2897705 |
Optional |
percent inflam infiltration |
Slide |
2897695 |
Optional |
percent lymphocyte infiltration |
Slide |
2897710 |
Optional |
percent monocyte infiltration |
Slide |
5455535 |
Optional |
percent necrosis |
Slide |
2841237 |
Optional |
percent neutrophil infiltration |
Slide |
2841267 |
Optional |
percent normal cells |
Slide |
2841233 |
Optional |
percent rhabdoid features |
Slide |
6790120 |
Optional |
percent sarcomatoid features |
Slide |
2429786 |
Optional |
percent stromal cells |
Slide |
2841241 |
Optional |
percent tumor cells |
Slide |
5432686 |
Optional |
percent tumor nuclei |
Slide |
2841225 |
Optional |
prostatic chips positive count |
Slide |
--- |
Optional |
prostatic chips total count |
Slide |
--- |
Optional |
prostatic involvement percent |
Slide |
--- |
Optional |
section location |
Slide |
--- |
Required |
tissue microarray coordinates |
Slide |
--- |
Optional |