| App Column 1 | App Column 2 |
|---|---|
Data Portal |
Website |
|
API |
Data Transfer Tool |
|
Documentation |
Data Submission Portal |
|
Legacy Archive |
The following table lists analyses and data files generated by the GDC. Only data files are made available through GDC data access tools. Not all programs, projects, or cases will have data available for all entities.
| Entity Category | Entity Name | Access (Open, Controlled) | File Format | File Metadata Template |
|---|---|---|---|---|
| Analysis | Read Group QC | -- | -- | TSV, JSON |
| Alignment + Co-cleaning | -- | -- | TSV, JSON | |
| Alignment | -- | -- | TSV, JSON | |
| Genomic Profile Harmonization | -- | -- | TSV, JSON | |
| RNA Expression | -- | -- | TSV, JSON | |
| miRNA Expression | -- | -- | TSV, JSON | |
| Germline Mutation Calling | -- | -- | TSV, JSON | |
| Somatic Mutation Calling | -- | -- | TSV, JSON | |
| Structural Variation Calling | -- | -- | TSV, JSON | |
| Data File | Aggregated Somatic Mutation | Controlled | MAF | TSV, JSON |
| Aligned Reads | Controlled | BAM | TSV, JSON | |
| Gene Expression | Open | TSV | TSV, JSON | |
| Masked Somatic Mutation | Open | MAF | TSV, JSON | |
| miRNA Expression | Open | TSV | TSV, JSON | |
| Structural Variation | Controlled | TSV | TSV, JSON |
GDC Data Model for Generated Files
The following figure displays the relationship between the different data model entities generated by the GDC. Arrows point to the parent entity. The complete GDC Data Model can be viewed here
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